Program

Download below the program of the LS2 Annual Meeting 2024 and its Young Scientists' Satellite:


Tuesday13.02.202412:00 – 19:00

12:00 – 12:30
Registration - Young Scientists' Satellite
12:30 – 12:35
Welcome Address
12:35 – 12:40
Introduction from YSSM Chairs
12:40 – 13:15
Keynote Lecture YSS
Melina SCHUH
Max Planck Institute for Multidisciplinary Sciences, DE
Visit Schuh's Lab Page

Mammalian oocytes store proteins for the early embryo on cytoplasmic lattices

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Mammalian oocytes are filled with poorly understood structures called cytoplasmic lattices. First discovered in the 1960s, and speculated to correspond to mammalian yolk, ribosomal arrays, or intermediate filaments, their function has remained enigmatic to date. We found that cytoplasmic lattices are sites where oocytes store essential proteins for early embryonic development. Using super-resolution light microscopy and cryo-electron tomography, we show that cytoplasmic lattices are composed of filaments with high surface area, which contain PADI6 and subcortical maternal complex proteins. The lattices associate with many proteins critical for embryonic development, including proteins that control epigenetic reprogramming of the preimplantation embryo. Loss of cytoplasmic lattices by ablation of PADI6 or the subcortical maternal complex prevents the accumulation of these proteins and results in early embryonic arrest. Our work suggests that cytoplasmic lattices enrich maternally-provided proteins to prevent their premature degradation and cellular activity, thereby enabling early mammalian development.

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13:15 – 14:00
Scientific Symposium I

Selected speakers from abstracts
Tomaz Martini (EPFL, CH)
"A sexually dimorphic hepatic cycle of very low density lipoprotein uptake and assembly"
 
Fabrizio Vacca (University of Lausanne, CH)
"A lysosome-Golgi connection corrects Cohen Syndrome cellular phenotype"
 
Jacqueline Hammer (ETHZ, CH)
"Elucidation of Cell Surface Proteotypes Using LUX-CSC"
 
Monique Straub (EPFL, CH)
"Overcoming preferred orientation in cryo-EM samples through microsecond melting and revitrification"

14:00 – 14:30
Coffee Break
14:30 – 15:15
Scientific Symposium II

Selected speakers from abstracts
Horia Hashimi (EPFL, CH)
"Mammalian adipogenesis regulators (Aregs) exhibit robust non- and anti-adipogenic properties that arise with age and involve retinoic acid signalling"
 
Pierre Alexander Miranda Herrera (EPFL, CH)
"Context-dependent mapping of ER-mitochondria-junction-specific stress sensors and their signaling activities"
 
Jean Radig (University of Zurich, CH)
"Autoencoder-based recovery of epigenomic signatures from low-pass cell-free DNA sequencing"
 
Blanca Lago Solis (University of Geneva, CH)
"Investigating the molecular mechanisms underlying the rhythmic gene expression in the mushroom body"

15:15 – 15:45
Prix Schläfli 2023 Winner Lecture
Joël BLOCH
The Rockefeller University, US
Visit Bloch's Lab Page

Structural insights into protein N-glycosylation in the endoplasmic reticulum

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In eukaryotic protein N-glycosylation a series of glycosyltransferases catalyze the biosynthesis of a lipid-linked oligosaccharide before its transfer onto acceptor proteins. The final seven steps occur in the lumen of the endoplasmic reticulum (ER) and require lipid-linked mannose and glucose as donor substrates. The responsible enzymes—ALG3, ALG9, ALG12, ALG6, ALG8, and ALG10—are glycosyltransferases of the C-superfamily (GT-Cs), which has long been loosely defined as containing membrane-spanning helices and processing isoprenoid-linked carbohydrate donor substrates. We present electron cryo-microscopy (Cryo-EM) structures of yeast ALG6, revealing a novel transmembrane protein fold. A comparison with reported GT-C structures suggests that GT-C enzymes contain a modular architecture with a conserved module and a variable module, each with distinct functional roles. Using synthetic analogs of lipid-linked substrate sugars and reconstituting the ALG pathway in vitro we generate donor and acceptor substrates and recapitulate the activity of ALG6 in vitro. A cryo-EM structure of ALG6 bound to a synthetic analog of its substrate dolichylphosphate-glucose reveals the active site of the enzyme and allows us to speculate on its enzymatic mechanism. Our results define the architecture of ER-luminal GT-C enzymes and provide a structural basis for understanding their catalytic mechanisms.

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15:45 – 16:15
Coffee Break
16:15 – 17:45
Career workshop - “Providing evidence for the skills that stay with you” by hfp consulting (DE)
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Researchers preparing for their next career step inside or outside of academia are often unsure about transferable skills (employability skills) and how to provide evidence for these competencies from their own career track. We will use this interactive workshop to raise awareness of the individual skill sets of the participants and will provide a frame how to structure these. Additionally, participants will learn and apply a universal tool how to provide evidence for diverse transferable skills and assertively communicate this.

Goals
Participating researchers will:
• Increase the awareness of their own skill set
• Learn how to provide evidence for transferable skills in a structured way
• Strengthen their network within LS2

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17:45 – 17:50
Closing Remarks
17:50 – 19:00
Meet & Great Apero


Wednesday14.02.202408:00 – 19:15

08:00 – 09:00
Registration & Welcome Coffee
09:00 – 09:10
Welcome Address
09:10 – 09:45
Keynote Lecture
Nicole KING
University of California, Berkeley, US
Visit King's Lab Page

Why choanoflagellates are so rarely “in the mood”

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The evolution of animals from their protozoan ancestors marks one of the most pivotal, and poorly understood, events in life’s history. As the closest living relatives of animals, choanoflagellates offer unique windows into animal origins and core features of animal cell biology. First, I will describe how the study of choanoflagellates has enriched our understanding of the first animals. Then I will focus on our most recent work, in which we have serendipitously discovered how the onset of mating behavior in choanoflagellates is regulated. This work provides insights into the evolution of gametogenesis in animal progenitors.

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09:45 – 10:15
Lelio Orci Award Lecture 2023

Linking membrane architecture and function

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Cellular membranes compartmentalise eukaryotic cells and host a large variety of functions. Many of these functions are tightly linked to membrane architecture. Despite their importance, little is known about how membrane shape, protein composition and supramolecular organization impact each other, and how their interplay supports cellular processes. Our aim is to understand mechanisms by which membrane architecture contributes to cellular functions. In particular, we study the architecture of organelle contact sites and mitochondrial membrane dynamics. We use CLEM to localize fluorescent signals in electron tomograms, and thereby link the presence or absence of key proteins to 3D membrane ultrastructure. To image protein assemblies within their native membrane environment, we use cryo-electron tomography of cells thinned by cryo-focused ion beam milling. We complement these methods with biochemistry, genetic perturbations, and live fluorescence microscopy. I will present how we use this approach to address questions in cellular membrane biology. 

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10:10 – 10:45
Coffee Break & Industry Exhibition
10:45 – 12:45
PIs of Tomorrow Competition (PIOT)
Prix Schläfli 2023 Award Nomination
12:45 – 14:25
Lunch Break / Industry Exhibition / Poster Viewing
Feedback Session PIs of Tomorrow
14:25 – 16:10
Parallel Symposia Session I

Genome stability and non-coding RNAs

Organized and chaired by Pei-Hsuan Wu (UNIGE) and Ramesh Pillai (UNIGE)

Selected speakers from abstracts
Irene Kalchhauser (University of Bern, CH)
"High nucleotide diversity accompanies differential DNA methylation in naturally diverging populations"
 
Giulia Perillo (University of Geneva, CH)
"Characterizing PIWI-interacting RNAs in mouse sperm and oocytes"
 
Adrian Stefanov (University of Bern, CH)
"The roles of small RNA pathways in programmed genomic excisions"
 
Feyza Polat (Institute of Molecular Biology, DE)
"Unravelling differences in SNRPB and SNRPN gene paralogues for RNA splicing"
 
Vincent Rapp (University of Bern, CH)
"Epigenomic profiling identifies a non-coding region that calibrates Tbx5 gene dosage in the developing heart and limb"


Functional tools and therapeutic applications at the crossroads of chemistry and biology

Organized by the Division of Medicinal Chemistry and Chemical Biology (DMCCB) of the Swiss Chemical Society (SCS)

Chaired by Yimon Aye (EPFL)

Industry talk

Thomas Frischmuth (Baseclick, DE)

"Novel bioconjugation strategies for modification, detection and targeting of Nucleic acids"

 

 Selected speakers from abstracts
Lalita Oparija Rogenmozere (University of Basel, CH)
"Non-redundant functions of PI3Kgamma complexes in obesity and metaflammation"
 
Dalu Chang (EPFL, CH) 
"Reprogramming Protein translation in spatiotemporal stress response"
 
Industry speaker
Philip R. Skaanderup (Novartis, CH)
"Genetic reprogramming to map target exons amenable to splicing modulation"


Crossing membranes: Structural and functional insights into transporters and channels
Cristina PAULINO
Heidelberg University Biochemistry Center (BZH), DE
Visit Paulino's Lab Page

Organized by Ion channels and Membrane Transporters Section of LS2 and sponsored by Solgate

Chaired by Manuele Rebsamen (University of Lausanne) & Cristina Manatschal (University of Zurich).

 

Selected speakers from abstracts
Eleonora Centonze (University of Lausanne, CH)
"Probing protonation-driven conformational changes in the ASIC1a β-turn domain through fluorescence measurements"
 
Ales Drobek (University of Lausanne, CH)
"The role of lupus-associated SLC15A4-TASL-IRF5 signaling axis in TLR7/9 dependent immune responses"
 
Iva Ganeva (University of Bern, CH)
"The architecture and mechanism of lipid transfer at interfaces between lipid droplets"
 
Loann Laubry (University of Geneva, CH)
"STIM1 and STIM1L in skeletal muscle: central regulators of calcium circuitry"
 
Miriam Lisci (University of Lausanne, CH)
"Nutrient-genetic screens highlight the role for mitochondrial transporter in surviving glutamine deprivation"

16:10 – 16:40
Coffee Break / Industry Exhibition / Poster Viewing
16:40 – 17:15
EMBO Keynote Lecture
Pavel TOMANCAK
Max Planck Institute of Molecular Cell Biology and Genetics, DE
Visit Tomancak's Lab Page

Evolution of Morphogenesis

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My presentation will examine how physico-chemical feedback loops that underly most of development are initiated in ontogeny and how they evolve. It shall be a tale of hydras and flies. 

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17:15 – 19:15
Apero / Poster Session I / Industry Exhibition


Thursday15.02.202408:15 – 17:15

08:15 – 09:00
Registration
09:00 – 09:05
Welcome Address
09:05 – 09:40
Keynote Lecture
Samer HATTAR
National Institute of Mental Health, US
Visit Hattar's Lab Page

Beyond vision: impacts of light on animal behavior

09:40 – 10:20
Coffee Break / Industry Exhibition / Poster Viewing
10:20 – 12:05
Parallel Symposia Session II

DNA Integrity
Aura CARREIRA
Centro de Biologia Molecular Severo Ochoa (CSIC-UAM), SP
Visit Carreira's Lab Page

Organized by MCB Section of LS2

Chaired by Petr Cejka (Institute for Research in Biomedicine (IRB), Università dell Svizzera italiana)

 

Selected speakers from abstracts
Chiara Auwerx (University of Lausanne, CH)
"Rare copy-number variants as modulators of common disease susceptibility"
 
Philippe JeanRichard (University of Bern, CH)
"The link of BOK to Uridine metabolism and mitochondrial function in cancer"
 
Thomas Pesket (ETHZ, CH)
"How old yeast decide"
 
Cathy Marulli (ETHZ, CH)
"Probing protein interactome dynamics using an experimental library of protein complex interfaces"


Artificial intelligence (AI) tools for drug discovery

Organized by Swiss Society of Experimental Pharmacology (SSEP)

Chaired by Georgia Konstantinidou (UNIBE) and Carole Bourquin (UNIGE)

 

Selected speakers from abstracts
Paulina Pacak (ETHZ, CH)
"First steps in Sperm-Egg Adhesion: Molecular Dynamics of JUNO-IZUMO1 complexation"
 
Jibira Yakubu (University of Bern, CH)
"Curcumin nanoformulation improves in-vitro suppression of steroidogenic Cytochrome P450s in dehydroepiandrosterone synthesis"
 
Shun Yi (University of Bern, CH)
"Oncogenic DMTF1β supports a breast and prostate cancer tumor-initiating cell phenotype"
 
Nevena Srejic (ETHZ, CH)
"Cells under pressure — Elucidating cellular signaling mechanisms activated by compressive mechanical stress"


Cardiovascular insights from single cell analysis

Organized by Cardiovascular Biology Section of LS

Chaired by Marie-Luce Bochaton-Piallat (UNIGE) and Christophe Montessuit (UNIGE)

Industry talk

Luisa Spisak (Bucher Biotech AG )

"Unlocking the Future of Cardiovascular Sample Preparation for Genetic
Analysis with the Singulator by S2 Genomics"

 

Selected speakers from abstracts
Matteo Zoia (University of Bern, CH)
"Multiome profiling identifies the cardiac enhancer landscapes underlying
mammalian heart morphogenesis"
 
Ksenia Kapitanova (University of Geneva, CH)
"Role of S100A4 in the crosstalk between smooth muscle and inflammatory 
cells in atherosclerosis"
 
Clémence Bechelli (University Hospital Lausanne, CH)
"Short-term carboloading diet promotes formation of natural bypass in a mouse
model of hindlimb ischemia"
 
Jérémy Kessler (University of Geneva, CH)
"New aspects of TGFβ signaling in muscle regeneration"

12:05 – 13:05
Lunch Break / Industry Exhibition
13:05 – 14:05
Poster Session
14:05 – 15:50
Parallel Symposia Session III

Windows to the Wonders of Life
David Niklas WISSEL
University of Zurich, ETH Zurich / Swiss Institute of Bioinformatics, CH
Visit Wissel's Lab Page

Organized by Swiss Institute of Bioinformatics (SIB)

Chaired by Katja Baerenfaller (University of Zurich /SIB)

 

Selected speakers from abstracts
Anjalie Schlaeppi (EPFL, CH)
"Implementing and supporting imaging-based spatial transcriptomics in core-facilities"
 
Valeria Timonina (EPFL, CH)
"Detection of mosaic Loss of Y chromosome from Exome sequencing data"
 
Arun Singh Maurya  (University of Lausanne, CH)
"Detecting high resolution copy number variations (CNV) from visium spatial gene expression data"
 
Daphne Laan (EPFL, CH)
"Determining how physical constraints shape organism behaviour"
 
Yandiswa Mabhude (University of the Western Cape, SA)
"Rapid and Sensitive Detection of E. coli in Water Using Aptamer-Based Gold Nanoparticle Lateral Flow Assay"
 
Anil Tuncel (EPFL, CH)
"Deciphering Neuronal Signals with the Electrophys Feature Extraction Library (eFEL)"


Molecules in motion: Revealing time-resolved processes in biology
Franka VOIGT
University of Zurich, CH
Visit Voigt's Lab Page

Organized by Biophysics Section of LS2 

Chaired by Beat Fierz (EPFL) and Stefanie Jonas (ETHZ)

 

Selected speakers from abstracts
Polina Isaikina (PSI, CH)
"Structural basis of the regulation of human chemokine receptor and HIV-1 co-receptor CCR5"
 
Sarah Barrass (EPFL, CH)
"Fast Viral Dynamics Revealed by Microsecond Time-Resolved Cryo-EM"
 
Alexandra Teslenko (EPFL, CH)
"Single-molecule enzymology of chromatin ubiquitination by PRC1: Unraveling the dynamics in real-time"
 
Anne-Laure Boinet (University of Geneva, CH)
"Characterization of the dynamic behaviour of clathrin and its adaptors along the endocytic timeline in yeast"
 
Alicia Borgeaud (University of Bern, CH)
"The behaviour of Apaf1 in apoptotic cells unveil apoptosome organization and dynamics in vivo"


The Contribution of One Health for Life Sciences: Fostering from collaboration between Switzerland and the Global South
Pascale VONAESCH
Department of Fundamental Microbiology, University of Lausanne, CH
Visit Vonaesch's Lab Page

Organized and chaired by Salome Duerr (UNIBE) and Hugues Abriel (UNIBE)

 

Selected speakers from abstracts
Jean Claude Makangara Cigolo (University of Bern, CH)
"Development and evaluation of metagenomics approaches for pathogen surveillance at the human-animal interface in limited-resource countries"
 
Harish Tiwari (Indian Institute of Technology Guwahati, IN)
"Rabies awareness in schools: exploring educators’ perspective"
 
Marc Yambayamba (University of Zurich, CH)
"Evaluation of One Health initiatives: A case study from the DR Congo"
 
Rahila Loum Gazida / Salome Dürr (University of Bern, CH)
"Seroprevalence and risk factors associated with fasciolosis in nomadic livestock populations across the Lake Chad region using multiple diagnostic methods"

15:50 – 16:10
Coffee Break / Industry Exhibition / Poster Viewing
16:10 – 16:40
Friedrich Miescher Award Lecture 2024

Motor proteins modulating Microtubule Shaft Dynamics

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Tubulin dimers assemble into dynamic microtubules which are used by molecular motors as tracks for intracellular transport. Organization and dynamics of the microtubule network is commonly thought to be regulated at the polymer ends, but recent results show that renewal of the microtubule shaft also impacts microtubule dynamics. However, the impact of shaft dynamics on the microtubule network is not understood, especially in a cellular contest. We show that, kinesin1 is not just using microtubules as tracks, but controls renewal of the microtubule track they are walking on. The kinesin-microtubule system is very efficient, within 15 min 20% of the microtubule is renewed. Thereby kinesin1 controls the lifetime, length, and organization of the cellular microtubule network. The car is not just using the street but reconstructing the street and organizing the street network. 

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16:40 – 17:10
Award Ceremony
17:10 – 17:15
Closing Remarks & Acknowledgements