Program


Tuesday11.02.202512:00 – 19:00

12:00 – 12:30
Registration & Coffee - Young Scientists' Satellite
12:30 – 12:35
Welcome Address
12:35 – 12:40
Introduction from YSSM Chairs
12:40 – 13:15
Keynote Lecture YSS
Giovanni D’ANGELO
Institute of Bioengineering, EPF Lausanne, CH
Visit D’Angelo's Lab Page

The Lipotype Hypothesis

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Single-cell genomics techniques have allowed for the deep profiling of individual cells in multicellular contexts. These new technologies have enabled the building of cell atlases where hundreds of different cell types are categorized according to their transcriptional and epigenetic states. These analyses have led to the depiction of detailed cell transcriptional landscapes that could be interpreted in terms of cell identity. Nonetheless, transcription represents only one axis in the establishment of cell phenotypes and functions and post-transcriptional events crucially concur to cell identity in ways that cannot be simply derived from transcriptional profiles. Thus, the chemical composition of individual cells and the activity of metabolic pathways are likely as good descriptors of cell identity as transcriptional profiles are. Moreover, accumulating findings assign to lipid metabolism an instructive role towards the establishment of cell identity, yet our understanding of the integration of transcriptional and lipid metabolic programs in cell fate determination remains superficial. Here I will report on our attempts to investigate lipidomes at single cell levels and at high spatial resolution by MALDI imaging mass spectrometry.

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13:15 – 14:00
Scientific Symposium I

Selected speakers from abstracts

Yara Ahmed (University of Fribourg)
"Phosphatidic Acid specificity of its dysferlin domain is required for the establishment of Pex30-dependent membrane contact sites"
 
Lina Heistinger (ETHZ)
"Decision making in the yeast courtship network"
 
Florent Lemaitre (University of Geneva)
"Cryo-Expansion microscopy: unveiling the molecular architecture of the immune synapse"
 
Pierre Marchal (University of Bern)
"Exploring the biological significance of circulating N-linked glycoproteins for the detection and treatment prediction in pleural mesothelioma cancer"

14:00 – 14:30
Coffee Break
14:30 – 15:15
Scientific Symposium II

Selected speakers from abstracts

Darko Stojkov (University of Bern)
"BK and TRPV2 channels induce metabolic changes in neutrophils to prevent life-threatening infections"
 
Tian Xie (University of Fribourg)
"Arginase II ablation mitigates high salt diet-induced macrophage infiltration/proliferation in heart and kidney"
 
Monika Gjorgjieva (University Hospital Geneva)
"Hepatic IR and IGF1R signaling govern distinct metabolic and carcinogenic processes upon PTEN deficiency in the liver"
 
Hadja Safiat Simboro (University of Fribourg)
"Extracellular Vesicles for drug delivery"

15:15 – 15:45
Coffee Break
15:45 – 15:55
Presentation from Fribourg Development Agency

"The Life Science Ecosystem of Western Switzerland"

15:55 – 17:45
Career Workshop
Elena BARLETTA
Erasmus Student Network (ESN Switzerland)
Visit Barletta's Lab Page

"Mastering connections: the power of listening and communicating effectively"

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Communication is the milestone of every successful interaction, yet the power of listening is often underestimated. Active listening goes beyond hearing words; it involves understanding emotions, perspectives, and underlying needs. This immersive workshop aims to delve into the principles of effective communication and cultivate the art of empathetic listening. Participants will explore the meaning and significance of effective communication, identify its key principles, and share their insights and ideas. Through interactive discussions and activities, attendees will unlock deeper connections and meaningful relationships, gaining a thorough understanding of what makes communication truly effective and how to apply these principles in various contexts.

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17:45 – 17:50
Closing Remarks & Acknowledgements
18:00 – 19:00
YSS Apero


Wednesday12.02.202508:00 – 19:15

08:00 – 09:00
Registration & Welcome Coffee
09:00 – 09:10
Welcome Address
09:10 – 09:45
The EMBO Keynote Lecture - Keynote I
Sascha MARTENS
University of Vienna. Vienna BioCenter (VBC), AT
Visit Martens' Lab Page

Mechanisms of selective autophagy

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Autophagy is an intracellular lysosomal bulk degradation pathway that ensures cellular homeostasis by the removal of damaged and dangerous material from the cytoplasm. This is achieved by the sequestration of the cytoplasmic cargo material within double membraned organelles called autophagosomes. The selective sequestration of only specific cargo material is mediated by cargo receptors that link the cargo to the nascent autophagosomal membrane. How cargo selection, membrane nucleation and growth are coupled is unclear. I will present our recent work on the cargo receptors and the autophagy machinery derived from in vitro reconstitution systems and cell biology. In particular, I will discuss how cargo receptors and the autophagy machinery act sequentially during cargo recognition, membrane nucleation and elongation to mediate the specific sequestration and subsequent degradation of cellular material. 

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09:45 – 10:15
Lelio Orci Award
Anne SPANG
Biozentrum, University of Basel
Visit Spang's Lab Page

Mechanisms of Intracellular Compartmentalization

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Cells need to communicate and interact with the environment. These interactions need to be facilitated through intracellular communication pathways, which comprises biosynthetic and endocytic transport and signaling pathways. In recent years it became clear that besides the classical pathways, organellar contact sites and membrane-less organelles are likewise important players of intracellular communication. Moreover, technological advances allowed a more precise dissection of vesicular transport. We are interested in understanding how different cellular – membrane-bounded and membrane-less – organelles interact with each other, how signals are relayed and how mRNAs and proteins are localized correctly in space and time, and how cells adapt their intracellular communication during perturbations such as stress or ageing. We use different experimental models such as S. cerevisiae, C. elegans and mammalian cells to gain understanding on single cells as well as on tissue and whole organism levels. The endosomal system is a particular interesting system to study intracellular communication as signals from the plasma membrane converge with biosynthetic route and the information has to be processed correctly. Moreover, the connections between organelles of the biosynthetic route with more metabolic organelles continuous to provide new insights in intracellular communication. There is still so much to learn – it is a really exciting time. I will discuss our latest findings on intracellular communication. 

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10:15 – 10:45
Coffee Break & Industry Exhibition
10:45 – 12:35
Special Plenary Session: PIs of Tomorrow

Finalists:

Tetiana Serdiuk (ETHZ)
Vakil Takhaveev (ETHZ)
Gea Silvia Sofia Cereghetti (University of Cambridge)
Carlos Flores (University of Basel)

12:35 – 14:25
Lunch Break / Industry Exhibition / Poster Viewing

Catering for industry representatives will be open from 12:15

13:15 – 14:45
Feedback Session PIs of Tomorrow 

(only for jury, chairs and finalists)

14:25 – 16:10
PARALLEL SYMPOSIA SESSION I

Cellular oxygen sensing in the post-Nobel era

 

Industry speakers

Krista Rantanen (The Baker Company)
"Making small changes for big impact - paradigm shift from normoxia to physoxia"
 
Valentina Millarte (Agilent Technologies)
"Real-Time cellular metabolism analysis: Agilent Seahorse analyzers and integrated microscopy for comprehensive mitochondrial and glycolytic function profiling"

 

Selected speakers from abstracts

 Marion Dübi (University Hospital Lausanne)
"Impaired angiogenesis and altered myocardial perfusion and metabolism in a rat model of intrauterine growth restriction"
 
Antonia Louise Herwig (University of Fribourg)
"The role of androglobin (ADGB) in ciliogenesis: transcriptional regulation and functional analysis of its globin domain"
 
Carina Osterhof (University of Fribourg)
"Characterisation of the hypoxia response of a non-symbiotic marine invertebrate"
 
Duilio Michele Potenza (University of Fribourg)
"Arginase-II regulates cardiac circadian tolerance to ischemia/reperfusion injury"


Imaging-based Spatial Omics
Gioele LA MANNO
Brain Mind Institute, EPF Lausanne, CH
Visit la Manno's Lab Page

Important update:  The talk of the invited speaker Gioele la Manno will be given by Antonio Herrera Camacho.

Industry speaker

Sara Milosevic (10X Genomics)

"Experience the power of the Xenium platform"

 

Selected speakers from abstracts

Cristina Tocchini (University of Basel)
"Translation-dependent mRNA localization to apical junctions"
 
Kaivalya Walavalkar (University of Zurich)
"Elucidating the structure and function of genome-nucleolus interactions in single nucleoli"


Mechanisms of selective autophagy in health and disease
Wade HARPER
Harvard Medical School, US
Visit Harper's Lab Page

 

Selected speakers from abstracts

Lisa Gambarotto (University of Lausanne)
"Autophagic regulation of RNAs in the brain"
 
Insa Klemt (ETHZ)
"To degrade or not to degrade: Ribosome abundance control under starvation conditions"
 
Alexandre Leytens (University of Fribourg)
"Targeted proteomics addresses selectivity and complexity of protein degradation by autophagy"

16:10 – 16:40
Coffee Break - Meet the speakers
16:40 – 17:15
Keynote II
Bernhard KÜSTER
Technical University of Munich, DE
Visit Küster's Lab Page

Adding a proteomic component to molecular tumor boards

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Cancer is a disease of malfunctioning proteins and the pathways they operate in. Many oncogenic signalling events are not discernible from genomic or transcriptomic data because they are strongly regulated by protein phosphorylation.
In this keynote lecture, I will present how we apply proteomics and phosphoproteomics to the analysis of cancer patients in a molecular tumor board setting. Discussed aspects are how we can turn around data from biopsy to tumor board meeting within one week, what the proteome does and does not tell us and what needs to happen next in order to roll this out to broader patient populations.

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17:15 – 19:15
Apero, Poster Session I & Industry Exhibition


Thursday13.02.202508:15 – 17:15

08:15 – 09:00
Registration & Welcome Coffee
09:00 – 09:05
Welcome Address
09:05 – 09:40
Keynote III

On sex and form

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Our research explores the idiosyncrasies of adult organs: how they differ between the sexes and are remodelled by their environment. Our work in Drosophila uncovered a gut-gonad axis that differs between the sexes and impacts food intake, gamete production and tumour susceptibility. Investigating how the intestine senses and responds to nutrients, we also discovered an intestinal zinc sensor that promotes Tor signalling to sustain food intake and developmental growth. More recently, we have investigated the sex and reproductive plasticity of the mammalian intestine in both mice and humans. We have also become very interested in the idea that the shape and position of the intestine constrain or enable its functions, and we have developed new methods to describe and interrogate these new dimensions to organ function. I will likely present some of this work.

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09:40 – 10:20
Coffee Break, Industry Exhibition & Poster Viewing
10:20 – 12:05
PARALLEL SYMPOSIA SESSION II

Seeing the Complexity of Life: Advances in Structural Cell Biology
Paula NAVARRO
University of Lausanne, CH
Visit Navarro's Lab Page

 

Selected speakers from abstracts

Leonie Anton (University of Bern)
"Visualizing Plasmodium falciparum 80S ribosome using in situ cryoET"
 
Dawid Warmus (University of Bern) 
"Investigating the role for alpha-giardins in unconventional secretion of Giardia's virulence factors"
 
Cristian Rocha (University of Fribourg)
"Lipid scrambling is a general feature of protein insertases"
 
Sim Sakong (EPFL)
"Eukaryotic transcription factor target search beyond DNA binding domains"
 
Giorgio Tortarolo (EPFL)
"Gentle and multi-color imaging of region of interests through Smart Scanning Event Driven Acquisition"


Evolutionary Cell Biology-cell function and structure through an evolutionary lens

 

Selected speakers from abstracts

Crisalida Borges (University of Geneva) 
"Who takes over when centrosomes are missing?"
 
Saloni Koli (University of Fribourg)
"Comparative analysis of Snf1 and SnRK1: evolutionary and functional roles of catalytic a-subunits"
 
 Joseph Oddy (University of Geneva) 
"The role of proteases in bacterial killing in Dictyostelium discoideum"
 
Armando Rubio Ramos (University of Geneva) 
"Charting the landscape of cytoskeletal diversity in microbial eukaryotes"
 
Tina Zajec Hudnik (ETHZ)
"Characterizing UV light-induced protein modifications in RNA-protein cross-linking: A biophysical approach"


Half-symposium - Personalized and systems pharmacology

 

Selected speakers from abstracts

Paolo Armando Gagliardi (University of Torino, Italy)
"Targeting emergent properties of signaling dynamics: collective ERK-activity waves in
PIK3CA H1047R mutant Cells"
 
Sacha Jacobs (University of Geneva)
"Investigation of the anti-tumour immune response in advanced colorectal cancer co-culture model "


Half-symposium - Strategies at the forefront of 3Rs to Replace, Reduce, and Refine animal experiments

 

Selected speakers from abstracts

Lisa Conrad (University of Bern)
"Utilizing cardioids for the identification of transcriptional enhancer landscapes underlying human cardiac morphogenesis"
 
Pierre Cosson (University of Geneva)
"How recombinant antibodies can change your life"

12:05 – 13:05
Lunch Break & Industry Exhibition

Catering for industry representatives will be open from 11:35

13:05 – 14:05
Poster Session II
14:05 – 15:50
PARALLEL SYMPOSIA SESSION III

Spatial proteomics: giving up on a bulk

 

Industry speaker
Lisa Schweizer (OmicVision Biosciences ApS)
Online Talk - "AI-Powered Spatial Proteomics Unlocks Insights into Pancreatic Cancer"

 

Selected speakers from abstracts

Melanie Brunner (University of Fribourg) 
"Proteome-wide in vitro kinase and phosphatase assays to determine enzyme-substrate interactions"
 
Thibault Courtellemont (EPFL)
"Democratizing spatial proteomics: creative solutions for an affordable pipeline"


The Complexity of GPCR networks

Important update: Vladimir Katanaev will present instead of Evi Kostenis

Vladimir Katanaev

"The Frizzled family of GPCRs: signaling mechanisms and targeting"

Selected speakers from abstracts

Sofia Papadogkonaki (University of Geneva) 
"Identification of opioid receptor trafficking regulators by unbiased screens"
 
Patrick Masson (SIB) 
"Systematic capture of human receptor-ligand interactions as Gene Ontology Causal Activity Models (GO-CAMs)"
 
Julia María Coronas-Serna (University of Geneva) 
"The Cdc42 effector Pak2 ensures fission yeast cell-cell fusion by antagonizing cell-wall repair mechanism"


Sensing and responding to the environment: An integrative systems biology approach

 

Selected speakers from abstracts

Elliott Bernard (University of Lausanne)
"NINJ1 mediated plasma membrane rupture is a two-step process requiring cell swelling"
 
Cristina Casals (Swiss Institute of Bioinformatics)
"Linking the human metabolome and proteome in UniProtKB through Rhea"
 
Vojislav Gligorovski (EPFL)
"A geometrical model of cell fate transitions in the budding yeast life-cycle"
 
Omar Keshk (EPFL)
"Genome-scale metabolic models for a synthetic soil microbial community as a path for understanding community functioning"
 
Seraina Olivia Moser (University of Basel)
"Inhibition of 11β-Hydroxysteroid dehydrogenase 2 by a metabolite derived from the gut microbiome"
 
Thomas Peskett (ETHZ)
"A biomolecular condensation network adjusts cell fate decisions to cellular context"
 
Prashant Rawat (ETHZ)
"Early transcriptional reprogramming upon chronic nucleolar stress leads to pro-metastatic phenotypes via the TP53-Golgi-TGFB2 axis"

15:50 – 16:10
Coffee Break - Meet the speakers
16:10 – 16:40
Friedrich Miescher Award

Claudia KELLER VALSECCHI
Institute of Molecular Biology, Mainz, DE
Visit Keller Valsecchi's Lab Page

Epigenetics of Sex Differences

Males and females of the same species often exhibit marked differences, extending beyond reproductive characteristics to encompass variations in size, appearance, and behavior. A striking example is seen in mosquitoes, where only females need a blood meal to produce eggs and, consequently, can transmit the malaria-causing parasite. Such “sexual dimorphism” is also evident in humans and can even influence the occurrence, severity, and treatment of diseases.While sex chromosomes often underlie these differences, the regulation of gene expression from sex chromosomes has primarily been studied in a few model organisms, overlooking the vast diversity of sex chromosome evolution and regulation. Even among well-studied mammalian species, it is increasingly clear that substantial differences exist, such as in the extent of X chromosome inactivation.Our research aims to uncover the molecular and cellular mechanisms responsible for sex differences. This knowledge will not only provide fundamental new insights into gene regulation, dosage-sensitivity and their  evolution but will also unravel the impact of sex differences on human health. 


Li TANG
Laboratory of Biomaterials for Immunoengineering, EPFL, CH
Visit Tang's Lab Page

Type 2 immunity may hold key to long-term cancer remission

Our immune system interacts with many diseases in a multidimensional manner involving substantial biological, chemical, and physical exchanges. Manipulating the disease-immunity interactions may afford novel immunotherapies to better treat diseases such as cancer. My lab aims to develop novel strategies to engineer the multidimensional immunity-disease interactions (or termed ‘immunoengineering’) to create safe and effective therapies against cancer. We leverage the power of metabolic and cellular bioengineering, synthetic chemistry and material engineering, and mechanical engineering to achieve controllable modulation of immune responses. In this talk, I will share our recent discovery of IL-10 and IL-4 as metabolic reprogramming agents that reinvigorate the terminally exhausted CD8+ tumor infiltrating lymphocytes. This strategy has been extended to develop metabolically armored CAR-T cells with IL-10 secretion to counter exhaustion-associated dysfunction in the tumor microenvironment for enhanced anticancer immunity. This new CAR-T cell therapy has shown promise in several on-going IIT clinical trials (ClinicalTrials.gov ID: NCT05715606, NCT05747157, NCT06120166) in the treatment of refractory/relapsed CD19+ B cell leukemia and lymphoma.

16:40 – 17:10
Award Ceremony
17:10 – 17:15
Closing Remarks & Acknowledgements